COG3079


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3079, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YgfB, UPF0149 family
Function(s) descr. Function unknown (S)

Occurence in the database

COG3079 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_828 FBDBKF_04160 18868 19449 -1 ygfB UPF0149 protein Morganella morganii S1
1 group_828 EHELCC_05450 78325 78906 -1 ygfB UPF0149 protein Morganella morganii S2
2 group_828 NLDBIP_05770 119390 119971 -1 ygfB UPF0149 protein Morganella morganii S4
3 group_828 LHKJJB_02650 96914 97495 -1 ygfB UPF0149 protein Morganella morganii S3
4 group_828 HKOGLL_06125 18778 19359 -1 ygfB UPF0149 protein Morganella morganii S5
5 group_828 F4V73_RS08605 1778296 1778877 -1 YecA family protein Morganella psychrotolerans
6 group_828 PMI_RS09985 2165793 2166377 -1 YecA family protein Proteus mirabilis HI4320