COG3070


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3070, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Transcriptional regulator of competence genes, TfoX/Sxy family
Function(s) descr. Transcription (K)

Occurence in the database

COG3070 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1261 FBDBKF_07350 154311 154922 1 tfoX Transcriptional regulator of competence genes, TfoX/Sxy family Morganella morganii S1
1 group_1261 EHELCC_03620 31264 31875 -1 tfoX Transcriptional regulator of competence genes, TfoX/Sxy family Morganella morganii S2
2 group_1261 NLDBIP_03620 31060 31671 -1 tfoX Transcriptional regulator of competence genes, TfoX/Sxy family Morganella morganii S4
3 group_1261 LHKJJB_09450 31174 31785 -1 tfoX Transcriptional regulator of competence genes, TfoX/Sxy family Morganella morganii S3
4 group_1261 HKOGLL_09525 159267 159878 1 tfoX Transcriptional regulator of competence genes, TfoX/Sxy family Morganella morganii S5
5 group_1261 F4V73_RS01535 342752 343363 1 TfoX/Sxy family DNA transformation protein Morganella psychrotolerans
6 group_1261 PMI_RS03865 875554 876168 1 TfoX/Sxy family DNA transformation protein Proteus mirabilis HI4320