COG3041


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3041, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 2 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module
Function(s) descr. Translation, ribosomal structure and biogenesis (J)
Defense mechanisms (V)

Occurence in the database

COG3041 is associated with 2 different proteins (see tab "Protein list" and "Profile")
The 2 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3872 F4V73_RS19205 4595 4870 1 type II toxin-antitoxin system YafQ family toxin Morganella psychrotolerans
1 group_3872 PMI_RS16445 3626837 3627097 -1 type II toxin-antitoxin system YafQ family toxin Proteus mirabilis HI4320