COG2949


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2949, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG2949 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1179 FBDBKF_06800 22735 23517 -1 sanA outer membrane permeability protein SanA Morganella morganii S1
1 group_1179 EHELCC_04170 162669 163451 1 sanA outer membrane permeability protein SanA Morganella morganii S2
2 group_1179 NLDBIP_04170 162465 163247 1 sanA outer membrane permeability protein SanA Morganella morganii S4
3 group_1179 LHKJJB_10000 162579 163361 1 sanA outer membrane permeability protein SanA Morganella morganii S3
4 group_1179 HKOGLL_08975 27691 28473 -1 sanA outer membrane permeability protein SanA Morganella morganii S5
5 group_1179 F4V73_RS00940 199488 200246 -1 sanA outer membrane permeability protein SanA Morganella psychrotolerans
6 group_1179 PMI_RS03160 697067 697792 -1 sanA outer membrane permeability protein SanA Proteus mirabilis HI4320