COG2867


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2867, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG2867 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2337 FBDBKF_18345 31017 31451 -1 pasT type II toxin-antitoxin system RatA family toxin Morganella morganii S1
1 group_2337 EHELCC_18380 30890 31324 -1 pasT type II toxin-antitoxin system RatA family toxin Morganella morganii S2
2 group_2337 NLDBIP_18305 31091 31525 -1 pasT type II toxin-antitoxin system RatA family toxin Morganella morganii S4
3 group_2337 LHKJJB_18500 30929 31363 -1 pasT type II toxin-antitoxin system RatA family toxin Morganella morganii S3
4 group_2337 HKOGLL_18235 30907 31341 -1 pasT type II toxin-antitoxin system RatA family toxin Morganella morganii S5
5 group_2337 F4V73_RS01875 409646 410080 -1 type II toxin-antitoxin system RatA family toxin Morganella psychrotolerans
6 group_2337 PMI_RS09400 2049770 2050204 -1 type II toxin-antitoxin system RatA family toxin Proteus mirabilis HI4320