COG2353


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2353, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Polyisoprenoid-binding periplasmic protein YceI
Function(s) descr. General function prediction only (R)

Occurence in the database

COG2353 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_261 FBDBKF_04615 122725 123303 -1 yceI YceI family protein Morganella morganii S1
1 group_261 EHELCC_05905 182182 182760 -1 yceI YceI family protein Morganella morganii S2
2 group_261 NLDBIP_06225 223247 223825 -1 yceI YceI family protein Morganella morganii S4
3 group_261 LHKJJB_03105 200771 201349 -1 yceI YceI family protein Morganella morganii S3
4 group_261 HKOGLL_06580 122635 123213 -1 yceI YceI family protein Morganella morganii S5
5 group_261 F4V73_RS08930 1854004 1854582 -1 YceI family protein Morganella psychrotolerans
6 group_261 F4V73_RS09065 1896299 1896874 -1 YceI family protein Morganella psychrotolerans
7 group_261 PMI_RS10440 2293968 2294546 -1 YceI family protein Proteus mirabilis HI4320