COG2104


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2104, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Sulfur carrier protein ThiS (thiamine biosynthesis)
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG2104 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2293 FBDBKF_17620 20213 20413 -1 thiS sulfur carrier protein ThiS Morganella morganii S1
1 group_2293 EHELCC_18105 19589 19789 -1 thiS sulfur carrier protein ThiS Morganella morganii S2
2 group_2293 NLDBIP_18045 18948 19148 1 thiS sulfur carrier protein ThiS Morganella morganii S4
3 group_2293 LHKJJB_18240 18948 19148 1 thiS sulfur carrier protein ThiS Morganella morganii S3
4 group_2293 HKOGLL_17960 19589 19789 -1 thiS sulfur carrier protein ThiS Morganella morganii S5
5 group_2293 F4V73_RS15000 238848 239048 -1 thiS sulfur carrier protein ThiS Morganella psychrotolerans
6 group_2293 PMI_RS13730 3050042 3050242 1 thiS sulfur carrier protein ThiS Proteus mirabilis HI4320