COG1987


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1987, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Flagellar biosynthesis protein FliQ
Function(s) descr. Cell motility (N)

Occurence in the database

COG1987 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_461 FBDBKF_00645 107073 107342 1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S1
1 group_461 EHELCC_00900 201526 201795 -1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S2
2 group_461 NLDBIP_02560 478341 478610 1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S4
3 group_461 LHKJJB_04075 85582 85851 1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S3
4 group_461 HKOGLL_02970 201731 202000 -1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S5
5 group_461 F4V73_RS06655 1383956 1384225 1 fliQ flagellar biosynthesis protein FliQ Morganella psychrotolerans
6 group_461 PMI_RS08015 1753280 1753549 1 fliQ flagellar biosynthesis protein FliQ Proteus mirabilis HI4320