COG1937


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1937, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 3 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator, FrmR family
Function(s) descr. Transcription (K)

Occurence in the database

COG1937 is associated with 3 different proteins (see tab "Protein list" and "Profile")
The 3 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3701 FBDBKF_12535 22520 22792 1 rcnR Ni(II)/Co(II)-binding transcriptional repressor RcnR Morganella morganii S1
1 group_3701 F4V73_RS07765 1621627 1621899 1 rcnR Ni(II)/Co(II)-binding transcriptional repressor RcnR Morganella psychrotolerans
2 group_3701 PMI_RS02225 519444 519719 -1 frmR formaldehyde-responsive transcriptional repressor FrmR Proteus mirabilis HI4320