COG1923


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1923, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description sRNA-binding regulator protein Hfq
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG1923 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1365 FBDBKF_08455 71519 71824 1 hfq RNA chaperone Hfq Morganella morganii S1
1 group_1365 EHELCC_13070 91901 92206 -1 hfq RNA chaperone Hfq Morganella morganii S2
2 group_1365 NLDBIP_13410 91901 92206 -1 hfq RNA chaperone Hfq Morganella morganii S4
3 group_1365 LHKJJB_13145 70237 70542 1 hfq RNA chaperone Hfq Morganella morganii S3
4 group_1365 HKOGLL_11885 91901 92206 -1 hfq RNA chaperone Hfq Morganella morganii S5
5 group_1365 F4V73_RS09675 37731 38039 1 hfq RNA chaperone Hfq Morganella psychrotolerans
6 group_1365 PMI_RS16750 3692616 3692906 1 hfq RNA chaperone Hfq Proteus mirabilis HI4320