COG1886


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1886, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Flagellar motor switch/type III secretory pathway protein FliN
Function(s) descr. Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG1886 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_458 FBDBKF_00630 105415 105825 1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S1
1 group_1458 FBDBKF_09315 94427 95284 -1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S1
2 group_458 EHELCC_00915 203043 203453 -1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S2
3 group_1458 EHELCC_10095 50820 51677 1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S2
4 group_458 NLDBIP_02545 476683 477093 1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S4
5 group_1458 NLDBIP_10440 29091 29948 1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S4
6 group_458 LHKJJB_04060 83924 84334 1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S3
7 group_1458 LHKJJB_10915 161580 162437 -1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S3
8 group_458 HKOGLL_02985 203248 203658 -1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S5
9 group_1458 HKOGLL_13975 94881 95738 -1 fliN Flagellar motor switch/type III secretory pathway protein FliN Morganella morganii S5
10 group_458 F4V73_RS06640 1382330 1382740 1 fliN flagellar motor switch protein FliN Morganella psychrotolerans
11 group_4084 F4V73_RS08330 1726393 1727298 1 FliM/FliN family flagellar motor switch protein Morganella psychrotolerans
12 group_1458 F4V73_RS10650 260275 261042 1 FliM/FliN family flagellar motor switch protein Morganella psychrotolerans
13 group_458 PMI_RS08000 1751635 1752045 1 fliN flagellar motor switch protein FliN Proteus mirabilis HI4320
14 group_1458 PMI_RS13250 2940538 2941467 -1 FliM/FliN family flagellar motor switch protein Proteus mirabilis HI4320