COG1854


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1854, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description S-ribosylhomocysteine lyase LuxS, autoinducer biosynthesis
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG1854 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2037 FBDBKF_15285 65876 66391 1 luxS S-ribosylhomocysteine lyase Morganella morganii S1
1 group_2037 EHELCC_10960 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S2
2 group_2037 NLDBIP_11305 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S4
3 group_2037 LHKJJB_11165 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S3
4 group_2037 HKOGLL_09775 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S5
5 group_2037 F4V73_RS12165 17842 18357 -1 luxS S-ribosylhomocysteine lyase Morganella psychrotolerans
6 group_2037 PMI_RS01840 433589 434104 1 luxS S-ribosylhomocysteine lyase Proteus mirabilis HI4320