COG1447


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1447, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 2 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Phosphotransferase system cellobiose-specific component IIA
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG1447 is associated with 2 different proteins (see tab "Protein list" and "Profile")
The 2 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3845 F4V73_RS09150 1915757 1916095 1 PTS lactose/cellobiose transporter subunit IIA Morganella psychrotolerans
1 group_3845 PMI_RS14605 3237505 3237852 -1 chbA PTS N,N'-diacetylchitobiose transporter subunit IIA Proteus mirabilis HI4320