COG1414


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1414, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator, IclR family
Function(s) descr. Transcription (K)

Occurence in the database

COG1414 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2488 FBDBKF_01530 306350 307123 1 iclR DNA-binding transcriptional regulator, IclR family Morganella morganii S1
1 group_2488 EHELCC_00015 1745 2518 -1 iclR DNA-binding transcriptional regulator, IclR family Morganella morganii S2
2 group_2488 NLDBIP_03445 677618 678391 1 iclR DNA-binding transcriptional regulator, IclR family Morganella morganii S4
3 group_2488 LHKJJB_04960 284859 285632 1 iclR DNA-binding transcriptional regulator, IclR family Morganella morganii S3
4 group_2488 HKOGLL_02085 1950 2723 -1 iclR DNA-binding transcriptional regulator, IclR family Morganella morganii S5
5 group_4291 PMI_RS00830 208781 209470 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
6 group_2488 PMI_RS13600 3020232 3021068 1 iclR glyoxylate bypass operon transcriptional repressor IclR Proteus mirabilis HI4320