Homologs in group_4291

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4291

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4291

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77300 5.56e-06 49 25 8 220 1 xynR HTH-type transcriptional regulator XynR Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00830
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 208781 - 209470 (strand: 1)
Length 690 (nucleotides) / 229 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4291
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF09339 IclR helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1414 Transcription (K) K DNA-binding transcriptional regulator, IclR family

Protein Sequence

MQNSQGVNSVDIAVTILEFLASQGGAARSSEIAKACSLSKSRLHKYLVSLCRSDMLYQESEGGQYCLGSKIIMLAEATHTNLSLVDEINQRLCEFRDEHNMSTGLVIAQGKKLYLVRYNRSFKHVDIDFLPNTPVPHKLSAAGATYAVFSHLEIDADLSIQQKNSIHQQGFAIRQQPAEGIPGAQSIACPVFNRKGEMVAAALTMGFIKPENQIELGNALKAKIRHVLS

Flanking regions ( +/- flanking 50bp)

AAATATCGTCATAAATAAAGATAAATAACGTCTTAGGCGTGGAGAAATAAATGCAGAATTCTCAAGGGGTTAACTCTGTTGATATCGCAGTGACTATTTTAGAGTTTTTAGCATCTCAAGGAGGTGCTGCACGCTCTTCTGAGATAGCTAAGGCATGCTCACTATCAAAAAGTCGTCTACATAAATATTTAGTGTCTCTTTGCCGTAGTGACATGCTCTATCAAGAGAGTGAAGGAGGGCAGTATTGTTTAGGTAGCAAAATTATAATGCTGGCTGAGGCAACACACACAAACCTCTCTTTAGTTGATGAAATTAATCAAAGACTTTGTGAATTTAGAGATGAGCATAATATGTCAACAGGACTTGTTATTGCTCAAGGTAAGAAGCTCTATTTAGTGAGATATAATCGTAGTTTTAAACATGTCGATATTGATTTTCTGCCAAATACACCCGTTCCACATAAATTGAGTGCGGCAGGCGCGACTTATGCAGTCTTTAGTCATTTAGAAATTGATGCTGATTTATCAATACAGCAAAAAAACAGTATACATCAACAAGGTTTTGCTATTCGCCAACAACCCGCTGAAGGTATTCCTGGGGCTCAATCTATTGCATGTCCTGTATTTAATAGGAAAGGTGAAATGGTCGCAGCCGCATTGACCATGGGATTTATTAAACCTGAAAACCAAATAGAATTAGGTAATGCATTAAAAGCAAAAATTCGCCATGTATTATCTTAATATTGCGAATATTTTTATCAAATACGTTTACTGGAAAAGTAAACGTATTT