Homologs in group_2488

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01530 FBDBKF_01530 27.2 Morganella morganii S1 iclR DNA-binding transcriptional regulator, IclR family
EHELCC_00015 EHELCC_00015 27.2 Morganella morganii S2 iclR DNA-binding transcriptional regulator, IclR family
NLDBIP_03445 NLDBIP_03445 27.2 Morganella morganii S4 iclR DNA-binding transcriptional regulator, IclR family
LHKJJB_04960 LHKJJB_04960 27.2 Morganella morganii S3 iclR DNA-binding transcriptional regulator, IclR family
HKOGLL_02085 HKOGLL_02085 27.2 Morganella morganii S5 iclR DNA-binding transcriptional regulator, IclR family

Distribution of the homologs in the orthogroup group_2488

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2488

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17430 5.29e-138 392 69 0 268 4 iclR Acetate operon repressor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P16528 3.19e-137 390 67 0 268 1 iclR Transcriptional repressor IclR Escherichia coli (strain K12)
Q1RF28 1.76e-67 213 43 4 265 3 allR HTH-type transcriptional repressor AllR Escherichia coli (strain UTI89 / UPEC)
A1A8H2 1.76e-67 213 43 4 265 3 allR HTH-type transcriptional repressor AllR Escherichia coli O1:K1 / APEC
P0ACN4 2.57e-67 213 43 4 265 1 allR HTH-type transcriptional repressor AllR Escherichia coli (strain K12)
P0ACN5 2.57e-67 213 43 4 265 3 allR HTH-type transcriptional repressor AllR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD5 2.57e-67 213 43 4 265 3 allR HTH-type transcriptional repressor AllR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P0ACN6 2.57e-67 213 43 4 265 3 allR HTH-type transcriptional repressor AllR Escherichia coli O157:H7
Q765S0 3.12e-67 213 41 1 266 3 allR HTH-type transcriptional repressor AllR Klebsiella pneumoniae
Q8ZR86 1.25e-63 204 43 2 264 3 allR HTH-type transcriptional repressor AllR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCF5 1.25e-63 204 43 2 264 3 allR HTH-type transcriptional repressor AllR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57S48 1.25e-63 204 43 2 264 3 allR HTH-type transcriptional repressor AllR Salmonella choleraesuis (strain SC-B67)
Q8Z8R2 5.2e-63 202 43 2 264 3 allR HTH-type transcriptional repressor AllR Salmonella typhi
A1B8Z4 3.19e-46 159 38 3 247 1 bhcR HTH-type transcriptional regulator BhcR Paracoccus denitrificans (strain Pd 1222)
P77300 3.87e-32 122 31 3 253 1 xynR HTH-type transcriptional regulator XynR Escherichia coli (strain K12)
P44996 8.02e-29 113 32 5 255 4 HI_1032 Uncharacterized HTH-type transcriptional regulator HI_1032 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
D4GP42 3.15e-26 106 30 3 230 1 xacR HTH-type transcriptional regulator XacR Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
P76268 7.04e-26 105 29 1 228 1 kdgR HTH-type transcriptional regulator KdgR Escherichia coli (strain K12)
P37671 1.81e-23 99 29 4 271 1 yiaJ DNA-binding transcriptional repressor YiaJ Escherichia coli (strain K12)
P37728 2.11e-22 97 28 1 228 1 kdgR HTH-type transcriptional regulator KdgR Dickeya chrysanthemi
P71977 2.4e-22 96 28 5 249 1 Rv1719 HTH-type transcriptional regulator Rv1719 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P15360 3.88e-22 95 29 3 250 4 gylR Glycerol operon regulatory protein Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P42968 1.68e-20 91 24 3 247 2 kipR HTH-type transcriptional regulator KipR Bacillus subtilis (strain 168)
Q0K846 9.07e-19 86 26 1 220 4 sauR Probable transcriptional regulator SauR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q52154 1.49e-18 86 25 2 229 2 pcaR Pca regulon regulatory protein Pseudomonas putida
P77732 1.83e-18 85 26 4 254 1 rhmR Uncharacterized HTH-type transcriptional regulator RhmR Escherichia coli (strain K12)
Q9R9U0 2.16e-18 85 28 8 239 1 srpS HTH-type transcriptional regulator SrpS Pseudomonas putida
P22866 2.39e-18 85 28 3 250 2 gylR Glycerol operon regulatory protein Streptomyces griseus
B0R9X6 3.48e-17 82 27 8 267 2 arcR Probable HTH-type transcriptional regulator ArcR Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
Q93PU6 1.96e-16 80 28 8 239 1 ttgV HTH-type transcriptional regulator TtgV Pseudomonas putida (strain DOT-T1E)
Q43992 2.66e-15 77 26 4 228 1 pobR p-hydroxybenzoate hydroxylase transcriptional activator Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P39360 6.51e-14 73 25 5 249 4 yjhI Uncharacterized HTH-type transcriptional regulator YjhI Escherichia coli (strain K12)
O83046 9.13e-12 67 22 3 235 2 pcaU Pca operon regulatory protein Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P77569 3.11e-07 53 26 6 204 4 mhpR DNA-binding transcriptional activator MhpR Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13600
Feature type CDS
Gene iclR
Product glyoxylate bypass operon transcriptional repressor IclR
Location 3020232 - 3021068 (strand: 1)
Length 837 (nucleotides) / 278 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2488
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01614 Bacterial transcriptional regulator
PF09339 IclR helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1414 Transcription (K) K DNA-binding transcriptional regulator, IclR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K13641 IclR family transcriptional regulator, acetate operon repressor - -

Protein Sequence

MTVFPTNKKARKPKTPATQSTAQGGPVQSLSRGLTLLEYISESPGGIALTDLAFQAGLPNSTTHRLLTTLQQHGFVRQVGDLGLWVVGTHAFIVGSSFLQTRNLLVMVHPILRQLMEDSGETVNLAILDQVEFDAVIVDQVQCNALMRMSAPIGGKLPMHASGAGKAFLSTLPENKLLPLLQKKGLMAYTPYTKTLPSALKENLEQARKQGFSFDDEEHALGLRCIGACIYDEHHQPFAAISLSGPVSRMTDSRITELGALVIKAAKQISREYGGVKS

Flanking regions ( +/- flanking 50bp)

ATATAGGTCATAATAGAGGATAATATGGACAGTATTTCTGGAGTGTAAGTATGACCGTCTTCCCTACCAATAAAAAAGCTCGTAAGCCAAAAACACCCGCAACTCAAAGTACTGCACAAGGTGGCCCCGTTCAGTCATTAAGCCGTGGCTTAACATTATTGGAATATATTTCCGAATCTCCAGGCGGTATTGCTTTAACTGATTTAGCTTTTCAAGCAGGACTACCCAATTCCACTACTCACCGCTTACTTACTACTTTGCAACAACATGGTTTTGTACGCCAAGTAGGTGATTTAGGTTTATGGGTAGTGGGCACTCATGCCTTTATTGTCGGTAGTAGCTTTCTGCAAACCCGTAACCTACTGGTTATGGTGCACCCTATATTGCGTCAATTAATGGAAGATTCTGGTGAAACCGTTAATTTGGCTATTCTTGATCAAGTTGAATTTGATGCGGTGATTGTCGACCAAGTACAATGTAATGCATTAATGAGAATGTCTGCCCCAATTGGCGGCAAGTTGCCAATGCATGCATCTGGTGCAGGTAAAGCATTTCTATCCACTTTACCGGAAAATAAGTTACTCCCCCTTTTACAGAAAAAAGGTCTGATGGCCTATACCCCTTATACCAAAACCTTACCTTCCGCATTAAAAGAGAATTTAGAACAAGCTCGTAAACAAGGTTTCTCTTTTGATGATGAAGAGCATGCATTAGGTTTACGTTGTATTGGCGCTTGTATCTATGATGAACACCACCAGCCTTTTGCCGCTATTTCACTCTCTGGCCCCGTATCTAGAATGACAGATTCACGCATTACGGAATTAGGTGCACTGGTGATAAAAGCGGCTAAGCAGATCAGCCGTGAATATGGTGGTGTAAAAAGTTAACCCAGCTAGGCCTTTCTATTTATTTATGTACAAATTAGGAAGGCTTCTCC