COG1289


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1289, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized membrane protein YccC
Function(s) descr. Function unknown (S)

Occurence in the database

COG1289 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2705 FBDBKF_06620 164847 165929 -1 yccC Uncharacterized membrane protein YccC Morganella morganii S1
1 group_295 FBDBKF_07355 154968 157184 -1 yccC Uncharacterized membrane protein YccC Morganella morganii S1
2 group_3266 FBDBKF_07395 162166 163116 -1 Integral membrane protein Morganella morganii S1
3 group_3266 EHELCC_03575 23070 24020 1 Integral membrane protein Morganella morganii S2
4 group_295 EHELCC_03615 29002 31218 1 yccC Uncharacterized membrane protein YccC Morganella morganii S2
5 group_2705 EHELCC_09665 165419 166501 -1 yccC Uncharacterized membrane protein YccC Morganella morganii S2
6 group_3266 NLDBIP_03575 22866 23816 1 Integral membrane protein Morganella morganii S4
7 group_295 NLDBIP_03615 28798 31014 1 yccC Uncharacterized membrane protein YccC Morganella morganii S4
8 group_2705 NLDBIP_10045 165419 166501 -1 yccC Uncharacterized membrane protein YccC Morganella morganii S4
9 group_2705 LHKJJB_07710 50737 51819 1 yccC Uncharacterized membrane protein YccC Morganella morganii S3
10 group_3266 LHKJJB_09405 22980 23930 1 Integral membrane protein Morganella morganii S3
11 group_295 LHKJJB_09445 28912 31128 1 yccC Uncharacterized membrane protein YccC Morganella morganii S3
12 group_2705 HKOGLL_07260 50737 51819 1 yccC Uncharacterized membrane protein YccC Morganella morganii S5
13 group_295 HKOGLL_09530 159924 162140 -1 yccC Uncharacterized membrane protein YccC Morganella morganii S5
14 group_3266 HKOGLL_09570 167122 168072 -1 Integral membrane protein Morganella morganii S5
15 group_295 F4V73_RS01540 343423 345648 -1 yccS YccS family putative transporter Morganella psychrotolerans
16 group_2705 F4V73_RS15315 48395 49474 1 FUSC family protein Morganella psychrotolerans
17 group_295 PMI_RS03870 876298 878472 -1 yccS YccS family putative transporter Proteus mirabilis HI4320
18 group_295 PMI_RS06110 1339443 1341299 1 FUSC family protein Proteus mirabilis HI4320