COG1166


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1166, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Arginine decarboxylase (spermidine biosynthesis)
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1166 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_879 FBDBKF_04520 99384 101288 -1 speA biosynthetic arginine decarboxylase Morganella morganii S1
1 group_879 EHELCC_05810 158841 160745 -1 speA biosynthetic arginine decarboxylase Morganella morganii S2
2 group_879 NLDBIP_06130 199906 201810 -1 speA biosynthetic arginine decarboxylase Morganella morganii S4
3 group_879 LHKJJB_03010 177430 179334 -1 speA biosynthetic arginine decarboxylase Morganella morganii S3
4 group_879 HKOGLL_06485 99294 101198 -1 speA biosynthetic arginine decarboxylase Morganella morganii S5
5 group_879 F4V73_RS08960 1860163 1862067 -1 speA biosynthetic arginine decarboxylase Morganella psychrotolerans
6 group_879 PMI_RS10315 2261381 2263288 -1 speA biosynthetic arginine decarboxylase Proteus mirabilis HI4320