COG1162


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1162, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosome biogenesis GTPase RsgA
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1162 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1358 FBDBKF_08415 62682 63731 -1 rsgA small ribosomal subunit biogenesis GTPase RsgA Morganella morganii S1
1 group_1358 EHELCC_13110 99994 101043 1 rsgA small ribosomal subunit biogenesis GTPase RsgA Morganella morganii S2
2 group_1358 NLDBIP_13450 99994 101043 1 rsgA small ribosomal subunit biogenesis GTPase RsgA Morganella morganii S4
3 group_1358 LHKJJB_13105 61400 62449 -1 rsgA small ribosomal subunit biogenesis GTPase RsgA Morganella morganii S3
4 group_1358 HKOGLL_11925 99994 101043 1 rsgA small ribosomal subunit biogenesis GTPase RsgA Morganella morganii S5
5 group_1358 F4V73_RS09625 28648 29697 -1 rsgA small ribosomal subunit biogenesis GTPase RsgA Morganella psychrotolerans
6 group_1358 PMI_RS16690 3682524 3683582 -1 rsgA small ribosomal subunit biogenesis GTPase RsgA Proteus mirabilis HI4320