COG1131
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1131, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
ABC-type multidrug transport system, ATPase component |
Function(s) descr. |
Defense mechanisms (V) |
Occurence in the database
COG1131 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_894 |
FBDBKF_04670 |
133739 |
136498 |
1 |
rbbA |
ribosome-associated ATPase/putative transporter RbbA |
Morganella morganii S1 |
1 |
group_1302 |
FBDBKF_07965 |
124314 |
125240 |
1 |
ccmA |
ABC-type multidrug transport system, ATPase component |
Morganella morganii S1 |
2 |
group_1479 |
FBDBKF_09550 |
8095 |
9840 |
1 |
lptB |
LPS export ABC transporter ATP-binding protein |
Morganella morganii S1 |
3 |
group_1479 |
EHELCC_04350 |
200060 |
201805 |
1 |
lptB |
LPS export ABC transporter ATP-binding protein |
Morganella morganii S2 |
4 |
group_894 |
EHELCC_05960 |
193196 |
195955 |
1 |
rbbA |
ribosome-associated ATPase/putative transporter RbbA |
Morganella morganii S2 |
5 |
group_1302 |
EHELCC_13795 |
98508 |
99434 |
1 |
ccmA |
ABC-type multidrug transport system, ATPase component |
Morganella morganii S2 |
6 |
group_1479 |
NLDBIP_04350 |
199856 |
201601 |
1 |
lptB |
LPS export ABC transporter ATP-binding protein |
Morganella morganii S4 |
7 |
group_894 |
NLDBIP_06280 |
234261 |
237020 |
1 |
rbbA |
ribosome-associated ATPase/putative transporter RbbA |
Morganella morganii S4 |
8 |
group_1302 |
NLDBIP_14240 |
119383 |
120309 |
1 |
ccmA |
ABC-type multidrug transport system, ATPase component |
Morganella morganii S4 |
9 |
group_894 |
LHKJJB_03160 |
211785 |
214544 |
1 |
rbbA |
ribosome-associated ATPase/putative transporter RbbA |
Morganella morganii S3 |
10 |
group_1302 |
LHKJJB_08610 |
39440 |
40366 |
-1 |
ccmA |
ABC-type multidrug transport system, ATPase component |
Morganella morganii S3 |
11 |
group_1479 |
LHKJJB_14280 |
133777 |
135522 |
-1 |
lptB |
LPS export ABC transporter ATP-binding protein |
Morganella morganii S3 |
12 |
group_894 |
HKOGLL_06635 |
133649 |
136408 |
1 |
rbbA |
ribosome-associated ATPase/putative transporter RbbA |
Morganella morganii S5 |
13 |
group_1302 |
HKOGLL_08160 |
39440 |
40366 |
-1 |
ccmA |
ABC-type multidrug transport system, ATPase component |
Morganella morganii S5 |
14 |
group_1479 |
HKOGLL_12255 |
8876 |
10621 |
1 |
lptB |
LPS export ABC transporter ATP-binding protein |
Morganella morganii S5 |
15 |
group_1479 |
F4V73_RS00815 |
168310 |
170055 |
-1 |
|
ATP-binding cassette domain-containing protein |
Morganella psychrotolerans |
16 |
group_894 |
F4V73_RS09135 |
1911420 |
1914179 |
1 |
rbbA |
ribosome-associated ATPase/putative transporter RbbA |
Morganella psychrotolerans |
17 |
group_1302 |
F4V73_RS13020 |
218042 |
218968 |
-1 |
|
ABC transporter ATP-binding protein |
Morganella psychrotolerans |
18 |
group_1302 |
PMI_RS00785 |
199546 |
200487 |
1 |
|
ABC transporter ATP-binding protein |
Proteus mirabilis HI4320 |
19 |
group_1479 |
PMI_RS03040 |
669331 |
671100 |
-1 |
|
ATP-binding cassette domain-containing protein |
Proteus mirabilis HI4320 |
20 |
group_894 |
PMI_RS05905 |
1294858 |
1297626 |
1 |
rbbA |
ribosome-associated ATPase/putative transporter RbbA |
Proteus mirabilis HI4320 |