Orthogroup:group_964


Homologs in group_964

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05310 FBDBKF_05310 Morganella morganii S1 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
EHELCC_12280 EHELCC_12280 Morganella morganii S2 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
NLDBIP_12620 NLDBIP_12620 Morganella morganii S4 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
LHKJJB_12480 LHKJJB_12480 Morganella morganii S3 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
HKOGLL_11095 HKOGLL_11095 Morganella morganii S5 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
F4V73_RS05765 F4V73_RS05765 Morganella psychrotolerans - ABC transporter permease
PMI_RS07170 PMI_RS07170 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of group_964 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_964 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_964

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_964.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dppB 5
2 - 2

Product

# Product Occurence
1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component 5
2 ABC transporter permease 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0601 7 EP Amino acid transport and metabolism (E)
Inorganic ion transport and metabolism (P)		 ABC-type dipeptide/oligopeptide/nickel transport system, permease component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02033 7 peptide/nickel transport system permease protein Quorum sensing -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00528 7 Binding-protein-dependent transport system inner membrane component
PF19300 7 Binding-prot-dependent transport system membrane comp, N-term

Annotations of the 78 SwissProt hits

Annotation Number of occurrences
Di/tripeptide transport system permease protein DppB 1
Di/tripeptide transport system permease protein DppC 1
Dipeptide transport system permease protein DppB 7
Dipeptide transport system permease protein DppC 4
Glutathione transport system permease protein GsiC 16
Inner membrane ABC transporter permease protein YejB 2
Metal-staphylopine import system permease protein CntB 2
Nickel import system permease protein NikB 9
Nickel transport system permease protein NikB 1
Oligopeptide transport system permease protein AmiC 2
Oligopeptide transport system permease protein AppB 1
Oligopeptide transport system permease protein AppC 1
Oligopeptide transport system permease protein OppB 11
Oligopeptide transport system permease protein OppC 2
Peptide transport system permease protein SapB 4
Peptidoglycan transport system permease protein YejB 1
Probable D,D-dipeptide transport system permease protein DdpB 1
Probable peptide ABC transporter permease protein y4tP 1
Putative peptide permease protein BMEII0860 1
Putative peptide permease protein BOV_A0351 1
Putative peptide permease protein BRA0408/BS1330_II0405 1
Putative peptide transport permease protein MT1320 1
Putative peptide transport permease protein Mb1314c 1
Putative peptide transport permease protein Rv1283c 1
Putative peptide transport system permease protein BAB2_1050 1
Putative peptide transport system permease protein BMEII0209 1
Putative peptide transport system permease protein BRA1092/BS1330_II1084 1
Putative peptide transport system permease protein BruAb2_1031 1
Putrescine export system permease protein SapB 1

Protein length

Min length 346
Max length 348
Mean length (sd) 347.7 (0.8)
Median length 348.0

Protein length distribution