COG0538


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0538, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Isocitrate dehydrogenase
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG0538 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1937 FBDBKF_14545 3630 4883 -1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S1
1 group_3610 FBDBKF_20100 5160 5312 1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S1
2 group_1937 EHELCC_15350 33706 34959 -1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S2
3 group_3610 EHELCC_19365 7385 7537 -1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S2
4 group_1937 NLDBIP_15880 33706 34959 -1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S4
5 group_3610 NLDBIP_19495 7385 7537 -1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S4
6 group_1937 LHKJJB_15960 81727 82980 1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S3
7 group_3610 LHKJJB_19455 5410 5562 1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S3
8 group_1937 HKOGLL_15080 80939 82192 1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S5
9 group_3610 HKOGLL_19375 7385 7537 -1 icd NADP-dependent isocitrate dehydrogenase Morganella morganii S5
10 group_1937 F4V73_RS07340 1531909 1533162 -1 icd NADP-dependent isocitrate dehydrogenase Morganella psychrotolerans
11 group_1937 PMI_RS04380 982975 984228 1 icd NADP-dependent isocitrate dehydrogenase Proteus mirabilis HI4320