COG0520


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0520, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Selenocysteine lyase/Cysteine desulfurase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0520 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_278 FBDBKF_05810 164123 165361 -1 sufS cysteine desulfurase SufS Morganella morganii S1
1 group_1076 FBDBKF_06105 44494 45705 1 csdA cysteine desulfurase CsdA Morganella morganii S1
2 group_1076 EHELCC_09150 45066 46277 1 csdA cysteine desulfurase CsdA Morganella morganii S2
3 group_278 EHELCC_11780 16133 17371 1 sufS cysteine desulfurase SufS Morganella morganii S2
4 group_1076 NLDBIP_09530 45066 46277 1 csdA cysteine desulfurase CsdA Morganella morganii S4
5 group_278 NLDBIP_12120 16088 17326 1 sufS cysteine desulfurase SufS Morganella morganii S4
6 group_1076 LHKJJB_08225 170961 172172 -1 csdA cysteine desulfurase CsdA Morganella morganii S3
7 group_278 LHKJJB_11980 16133 17371 1 sufS cysteine desulfurase SufS Morganella morganii S3
8 group_1076 HKOGLL_07775 170961 172172 -1 csdA cysteine desulfurase CsdA Morganella morganii S5
9 group_278 HKOGLL_10595 16133 17371 1 sufS cysteine desulfurase SufS Morganella morganii S5
10 group_278 F4V73_RS03515 752107 753345 1 sufS cysteine desulfurase SufS Morganella psychrotolerans
11 group_1076 F4V73_RS15810 168701 169909 -1 csdA cysteine desulfurase CsdA Morganella psychrotolerans
12 group_278 F4V73_RS16875 204456 205751 -1 aminotransferase class V-fold PLP-dependent enzyme Morganella psychrotolerans
13 group_278 PMI_RS06830 1490568 1491809 -1 sufS cysteine desulfurase SufS Proteus mirabilis HI4320
14 group_1076 PMI_RS11370 2502339 2503553 1 csdA cysteine desulfurase CsdA Proteus mirabilis HI4320