COG0410


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0410, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type branched-chain amino acid transport system, ATPase component LivF
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0410 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2604 FBDBKF_03460 97737 98438 -1 livF high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF Morganella morganii S1
1 group_2604 EHELCC_07075 148665 149366 1 livF high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF Morganella morganii S2
2 group_2604 NLDBIP_07400 148538 149239 1 livF high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF Morganella morganii S4
3 group_2604 LHKJJB_06935 112284 112985 1 livF high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF Morganella morganii S3
4 group_2604 HKOGLL_03995 120402 121103 -1 livF high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF Morganella morganii S5
5 group_2604 F4V73_RS11435 430227 430928 1 livF high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF Morganella psychrotolerans