COG0343


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0343, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Queuine/archaeosine tRNA-ribosyltransferase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0343 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2261 FBDBKF_17405 11662 12786 -1 tgt tRNA guanosine(34) transglycosylase Tgt Morganella morganii S1
1 group_2261 EHELCC_17300 11662 12786 -1 tgt tRNA guanosine(34) transglycosylase Tgt Morganella morganii S2
2 group_2261 NLDBIP_17895 30010 31134 1 tgt tRNA guanosine(34) transglycosylase Tgt Morganella morganii S4
3 group_2261 LHKJJB_17815 30008 31132 1 tgt tRNA guanosine(34) transglycosylase Tgt Morganella morganii S3
4 group_2261 HKOGLL_17825 30008 31132 1 tgt tRNA guanosine(34) transglycosylase Tgt Morganella morganii S5
5 group_2261 F4V73_RS16580 135363 136487 -1 tgt tRNA guanosine(34) transglycosylase Tgt Morganella psychrotolerans
6 group_2261 PMI_RS00365 104365 105507 1 tgt tRNA guanosine(34) transglycosylase Tgt Proteus mirabilis HI4320