COG0340


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0340, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Biotin-(acetyl-CoA carboxylase) ligase
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG0340 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2447 FBDBKF_20345 1555 2535 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S1
1 group_2447 EHELCC_19685 1555 2535 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S2
2 group_2447 NLDBIP_19670 2048 3028 -1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S4
3 group_2447 LHKJJB_19630 1555 2535 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S3
4 group_2447 HKOGLL_19550 2048 3028 -1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S5
5 group_2447 F4V73_RS18870 1557 2537 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella psychrotolerans
6 group_2447 PMI_RS16095 3576871 3577833 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Proteus mirabilis HI4320