COG0275


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0275, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 16S rRNA C1402 N4-methylase RsmH
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0275 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_865 FBDBKF_04375 65164 66105 -1 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH Morganella morganii S1
1 group_865 EHELCC_05665 124621 125562 -1 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH Morganella morganii S2
2 group_865 NLDBIP_05985 165686 166627 -1 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH Morganella morganii S4
3 group_865 LHKJJB_02865 143210 144151 -1 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH Morganella morganii S3
4 group_865 HKOGLL_06340 65074 66015 -1 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH Morganella morganii S5
5 group_865 F4V73_RS08820 1826284 1827234 -1 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH Morganella psychrotolerans
6 group_865 PMI_RS10240 2242905 2243852 -1 rsmH 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH Proteus mirabilis HI4320