COG0245


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0245, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Function(s) descr. Lipid transport and metabolism (I)

Occurence in the database

COG0245 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2353 FBDBKF_18995 16451 16933 -1 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Morganella morganii S1
1 group_2353 EHELCC_18740 16451 16933 -1 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Morganella morganii S2
2 group_2353 NLDBIP_18565 8580 9062 1 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Morganella morganii S4
3 group_2353 LHKJJB_18610 16451 16933 -1 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Morganella morganii S3
4 group_2353 HKOGLL_18345 16451 16933 -1 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Morganella morganii S5
5 group_2353 F4V73_RS13905 418020 418499 -1 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Morganella psychrotolerans
6 group_2353 PMI_RS11040 2430761 2431243 -1 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Proteus mirabilis HI4320