COG0217


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0217, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Transcriptional and/or translational regulatory protein YebC/TACO1
Function(s) descr. Transcription (K)
Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0217 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_633 FBDBKF_02050 98963 99706 1 tACO1 YebC/PmpR family DNA-binding transcriptional regulator Morganella morganii S1
1 group_633 EHELCC_02520 486783 487526 1 tACO1 YebC/PmpR family DNA-binding transcriptional regulator Morganella morganii S2
2 group_633 NLDBIP_00940 192610 193353 -1 tACO1 YebC/PmpR family DNA-binding transcriptional regulator Morganella morganii S4
3 group_633 LHKJJB_01095 199332 200075 1 tACO1 YebC/PmpR family DNA-binding transcriptional regulator Morganella morganii S3
4 group_633 HKOGLL_01135 204843 205586 1 tACO1 YebC/PmpR family DNA-binding transcriptional regulator Morganella morganii S5
5 group_633 F4V73_RS04415 934808 935551 1 YebC/PmpR family DNA-binding transcriptional regulator Morganella psychrotolerans
6 group_633 PMI_RS05400 1182014 1182769 1 YebC/PmpR family DNA-binding transcriptional regulator Proteus mirabilis HI4320