COG0189
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0189, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 8 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily |
---|---|
Function(s) descr. | Amino acid transport and metabolism (E) Coenzyme transport and metabolism (H) Translation, ribosomal structure and biogenesis (J) Secondary metabolites biosynthesis, transport and catabolism (Q) |
Occurence in the database
COG0189 is associated with 8 different proteins (see tab "Protein list" and "Profile") |
The 8 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_2003 | FBDBKF_15060 | 21373 | 22323 | -1 | gshB | glutathione synthase | Morganella morganii S1 |
1 | group_2003 | EHELCC_11185 | 62583 | 63533 | 1 | gshB | glutathione synthase | Morganella morganii S2 |
2 | group_2003 | NLDBIP_11530 | 62583 | 63533 | 1 | gshB | glutathione synthase | Morganella morganii S4 |
3 | group_2003 | LHKJJB_11390 | 62583 | 63533 | 1 | gshB | glutathione synthase | Morganella morganii S3 |
4 | group_2003 | HKOGLL_10000 | 62583 | 63533 | 1 | gshB | glutathione synthase | Morganella morganii S5 |
5 | group_2003 | F4V73_RS12390 | 63256 | 64206 | 1 | gshB | glutathione synthase | Morganella psychrotolerans |
6 | group_4189 | F4V73_RS17540 | 143297 | 144235 | -1 | RimK-like protein | Morganella psychrotolerans | |
7 | group_2003 | PMI_RS01625 | 388974 | 389930 | -1 | gshB | glutathione synthase | Proteus mirabilis HI4320 |