COG0189


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0189, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily
Function(s) descr. Amino acid transport and metabolism (E)
Coenzyme transport and metabolism (H)
Translation, ribosomal structure and biogenesis (J)
Secondary metabolites biosynthesis, transport and catabolism (Q)

Occurence in the database

COG0189 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2003 FBDBKF_15060 21373 22323 -1 gshB glutathione synthase Morganella morganii S1
1 group_2003 EHELCC_11185 62583 63533 1 gshB glutathione synthase Morganella morganii S2
2 group_2003 NLDBIP_11530 62583 63533 1 gshB glutathione synthase Morganella morganii S4
3 group_2003 LHKJJB_11390 62583 63533 1 gshB glutathione synthase Morganella morganii S3
4 group_2003 HKOGLL_10000 62583 63533 1 gshB glutathione synthase Morganella morganii S5
5 group_2003 F4V73_RS12390 63256 64206 1 gshB glutathione synthase Morganella psychrotolerans
6 group_4189 F4V73_RS17540 143297 144235 -1 RimK-like protein Morganella psychrotolerans
7 group_2003 PMI_RS01625 388974 389930 -1 gshB glutathione synthase Proteus mirabilis HI4320