COG0073


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0073, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA-binding EMAP/Myf domain
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0073 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_499 FBDBKF_00930 170524 170865 -1 csaA tRNA-binding protein Morganella morganii S1
1 group_3323 FBDBKF_11075 38909 39241 -1 metG tRNA-binding protein Morganella morganii S1
2 group_499 EHELCC_00615 138003 138344 1 csaA tRNA-binding protein Morganella morganii S2
3 group_3323 EHELCC_05150 20227 20559 1 metG tRNA-binding protein Morganella morganii S2
4 group_499 NLDBIP_02845 541792 542133 -1 csaA tRNA-binding protein Morganella morganii S4
5 group_3323 NLDBIP_05470 61292 61624 1 metG tRNA-binding protein Morganella morganii S4
6 group_3323 LHKJJB_02350 38816 39148 1 metG tRNA-binding protein Morganella morganii S3
7 group_499 LHKJJB_04360 149033 149374 -1 csaA tRNA-binding protein Morganella morganii S3
8 group_499 HKOGLL_02685 138208 138549 1 csaA tRNA-binding protein Morganella morganii S5
9 group_3323 HKOGLL_15730 62256 62588 1 metG tRNA-binding protein Morganella morganii S5
10 group_499 F4V73_RS06925 1436676 1437017 -1 tRNA-binding protein Morganella psychrotolerans
11 group_499 PMI_RS05010 1095725 1096078 1 tRNA-binding protein Proteus mirabilis HI4320