COG0025


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0025, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description NhaP-type Na+/H+ or K+/H+ antiporter
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG0025 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2714 FBDBKF_06880 41647 43284 1 nhaP Na+/H+ antiporter Morganella morganii S1
1 group_2223 FBDBKF_16990 26647 28296 -1 nhaP Na+/H+ antiporter Morganella morganii S1
2 group_2714 EHELCC_04090 142902 144539 -1 nhaP Na+/H+ antiporter Morganella morganii S2
3 group_2223 EHELCC_16600 40214 41863 1 nhaP Na+/H+ antiporter Morganella morganii S2
4 group_2714 NLDBIP_04090 142698 144335 -1 nhaP Na+/H+ antiporter Morganella morganii S4
5 group_2223 NLDBIP_16810 40214 41863 1 nhaP Na+/H+ antiporter Morganella morganii S4
6 group_2714 LHKJJB_09920 142812 144449 -1 nhaP Na+/H+ antiporter Morganella morganii S3
7 group_2223 LHKJJB_16660 26647 28296 -1 nhaP Na+/H+ antiporter Morganella morganii S3
8 group_2714 HKOGLL_09055 46603 48240 1 nhaP Na+/H+ antiporter Morganella morganii S5
9 group_2223 HKOGLL_17625 26647 28296 -1 nhaP Na+/H+ antiporter Morganella morganii S5
10 group_2714 F4V73_RS12595 114470 116107 1 Na+/H+ antiporter Morganella psychrotolerans
11 group_2223 F4V73_RS18450 24880 26529 -1 Na+/H+ antiporter Morganella psychrotolerans
12 group_2223 PMI_RS17525 3846850 3848499 1 Na+/H+ antiporter Proteus mirabilis HI4320