Orthogroup:group_988



Homologs in group_988

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05465 FBDBKF_05465 Morganella morganii S1 dadA Glycine/D-amino acid oxidase (deaminating)
EHELCC_12125 EHELCC_12125 Morganella morganii S2 dadA Glycine/D-amino acid oxidase (deaminating)
NLDBIP_12465 NLDBIP_12465 Morganella morganii S4 dadA Glycine/D-amino acid oxidase (deaminating)
LHKJJB_12325 LHKJJB_12325 Morganella morganii S3 dadA Glycine/D-amino acid oxidase (deaminating)
HKOGLL_10940 HKOGLL_10940 Morganella morganii S5 dadA Glycine/D-amino acid oxidase (deaminating)
F4V73_RS03830 F4V73_RS03830 Morganella psychrotolerans - D-amino acid dehydrogenase
PMI_RS07315 PMI_RS07315 Proteus mirabilis HI4320 - D-amino acid dehydrogenase

Distribution of group_988 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_988 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_988

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_988.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dadA 5
2 - 2

Product

# Product Occurence
1 Glycine/D-amino acid oxidase (deaminating) 5
2 D-amino acid dehydrogenase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0665 7 E Amino acid transport and metabolism (E) Glycine/D-amino acid oxidase (deaminating)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00285 7 D-amino-acid dehydrogenase [EC:1.4.5.1] Phenylalanine metabolism
D-Amino acid metabolism
Metabolic pathways
-

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01266 7 FAD dependent oxidoreductase

Annotations of the 195 SwissProt hits

Annotation Number of occurrences
4-methylaminobutanoate oxidase (formaldehyde-forming) 1
Bifunctional protein ThiO/ThiG 3
D-amino acid dehydrogenase 163
D-amino acid dehydrogenase 1 4
D-amino acid dehydrogenase 2 4
D-amino acid dehydrogenase 3 1
D-amino-acid oxidase 1
D-proline dehydrogenase 1
Dimethylglycine oxidase 1
Glycine oxidase 5
Hydrogen cyanide synthase subunit HcnC 2
Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial 3
Sarcosine oxidase subunit beta 3
Uncharacterized oxidoreductase YurR 1
Uncharacterized oxidoreductase in pyp 5'region (Fragment) 1
Uncharacterized oxidoreductase y4sL 1

Protein length

Min length 432
Max length 434
Mean length (sd) 432.3 (0.8)
Median length 432.0

Protein length distribution