COG3033


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3033, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Tryptophanase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG3033 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_89 FBDBKF_07875 103183 104580 1 tnaA tryptophanase Morganella morganii S1
1 group_89 FBDBKF_11135 52117 53487 -1 tpl tyrosine phenol-lyase Morganella morganii S1
2 group_89 EHELCC_05090 5981 7351 1 tpl tyrosine phenol-lyase Morganella morganii S2
3 group_89 EHELCC_13705 77377 78774 1 tnaA tryptophanase Morganella morganii S2
4 group_89 NLDBIP_05410 47054 48424 1 tpl tyrosine phenol-lyase Morganella morganii S4
5 group_89 NLDBIP_14150 98252 99649 1 tnaA tryptophanase Morganella morganii S4
6 group_89 LHKJJB_02290 24578 25948 1 tpl tyrosine phenol-lyase Morganella morganii S3
7 group_89 LHKJJB_08700 60100 61497 -1 tnaA tryptophanase Morganella morganii S3
8 group_89 HKOGLL_08250 60100 61497 -1 tnaA tryptophanase Morganella morganii S5
9 group_89 HKOGLL_15670 48018 49388 1 tpl tyrosine phenol-lyase Morganella morganii S5
10 group_89 F4V73_RS08140 1690832 1692202 1 tyrosine phenol-lyase Morganella psychrotolerans
11 group_89 F4V73_RS13145 245827 247224 -1 tnaA tryptophanase Morganella psychrotolerans