COG3260


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3260, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ni,Fe-hydrogenase III small subunit
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG3260 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_790 FBDBKF_03705 143097 143879 -1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S1
1 group_790 EHELCC_06830 103224 104006 1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S2
2 group_790 NLDBIP_07155 103097 103879 1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S4
3 group_790 LHKJJB_06690 66843 67625 1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S3
4 group_790 HKOGLL_04240 165762 166544 -1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S5
5 group_790 F4V73_RS11165 373557 374339 1 NADH-quinone oxidoreductase subunit B family protein Morganella psychrotolerans
6 group_790 PMI_RS12460 2762452 2763234 -1 NADH-quinone oxidoreductase subunit B family protein Proteus mirabilis HI4320