Orthogroup:group_615


Homologs in group_615

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01945 FBDBKF_01945 Morganella morganii S1 yhcC TIGR01212 family radical SAM protein
EHELCC_02415 EHELCC_02415 Morganella morganii S2 yhcC TIGR01212 family radical SAM protein
NLDBIP_01045 NLDBIP_01045 Morganella morganii S4 yhcC TIGR01212 family radical SAM protein
LHKJJB_00990 LHKJJB_00990 Morganella morganii S3 yhcC TIGR01212 family radical SAM protein
HKOGLL_01030 HKOGLL_01030 Morganella morganii S5 yhcC TIGR01212 family radical SAM protein
F4V73_RS04290 F4V73_RS04290 Morganella psychrotolerans - TIGR01212 family radical SAM protein
PMI_RS05285 PMI_RS05285 Proteus mirabilis HI4320 - TIGR01212 family radical SAM protein

Distribution of group_615 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_615 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_615

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_615.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yhcC 5
2 - 2

Product

# Product Occurence
1 TIGR01212 family radical SAM protein 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1242 7 R General function prediction only (R) Radical SAM superfamily enzyme

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07139 7 uncharacterized protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04055 7 Radical SAM superfamily
PF16199 7 Radical_SAM C-terminal domain

Annotations of the 35 SwissProt hits

Annotation Number of occurrences
Biotin synthase 1
Elongator complex protein 3 15
Heme chaperone HemW 1
Probable threonylcarbamoyladenosine tRNA methylthiotransferase 1
Protein YhcC 1
Putative methylthiotransferase MJ0865 1
Ribosomal protein uS12 methylthiotransferase RimO 3
Uncharacterized methyltransferase MJ1487 1
Uncharacterized protein MJ0486 1
Uncharacterized protein YhcC 1
Uncharacterized protein YtqA 1
tRNA uridine(34) acetyltransferase 3
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 5

Protein length

Min length 300
Max length 317
Mean length (sd) 303.7 (6.8)
Median length 300.0

Protein length distribution