Orthogroup:group_565


Homologs in group_565

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01460 FBDBKF_01460 Morganella morganii S1 rpoE RNA polymerase sigma factor RpoE
EHELCC_00085 EHELCC_00085 Morganella morganii S2 rpoE RNA polymerase sigma factor RpoE
NLDBIP_03375 NLDBIP_03375 Morganella morganii S4 rpoE RNA polymerase sigma factor RpoE
LHKJJB_04890 LHKJJB_04890 Morganella morganii S3 rpoE RNA polymerase sigma factor RpoE
HKOGLL_02155 HKOGLL_02155 Morganella morganii S5 rpoE RNA polymerase sigma factor RpoE
F4V73_RS01945 F4V73_RS01945 Morganella psychrotolerans rpoE RNA polymerase sigma factor RpoE
PMI_RS09350 PMI_RS09350 Proteus mirabilis HI4320 rpoE RNA polymerase sigma factor RpoE

Distribution of group_565 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_565 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_565

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_565.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoE 7

Product

# Product Occurence
1 RNA polymerase sigma factor RpoE 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1595 7 K Transcription (K) DNA-directed RNA polymerase specialized sigma subunit, sigma24 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03088 7 RNA polymerase sigma-70 factor, ECF subfamily - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04542 7 Sigma-70 region 2
PF08281 7 Sigma-70, region 4

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG000121 7 alginate biosynthesis protein AlgZ/FimS VF0091 Biofilm

Annotations of the 42 SwissProt hits

Annotation Number of occurrences
ECF RNA polymerase sigma factor BldN 1
ECF RNA polymerase sigma factor EcfG 1
ECF RNA polymerase sigma factor SigC 2
ECF RNA polymerase sigma factor SigE 4
ECF RNA polymerase sigma factor SigG 2
ECF RNA polymerase sigma factor SigH 4
ECF RNA polymerase sigma factor SigM 3
ECF RNA polymerase sigma factor SigR 1
ECF RNA polymerase sigma factor SigW 1
ECF RNA polymerase sigma factor SigX 1
ECF RNA polymerase sigma-E factor 8
Probable RNA polymerase sigma factor HI_1459 1
Probable RNA polymerase sigma factor RfaY 1
Probable RNA polymerase sigma-C factor 1
RNA polymerase sigma factor CarQ 1
RNA polymerase sigma factor CnrH 1
RNA polymerase sigma factor HrpL 1
RNA polymerase sigma factor NccH 1
RNA polymerase sigma factor SigV 1
RNA polymerase sigma factor SigY 1
RNA polymerase sigma factor SigZ 1
RNA polymerase sigma factor YlaC 1
RNA polymerase sigma-H factor 3

Protein length

Min length 191
Max length 192
Mean length (sd) 191.9 (0.4)
Median length 192.0

Protein length distribution