Orthogroup:group_543



Homologs in group_543

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01270 FBDBKF_01270 Morganella morganii S1 trpS tryptophan--tRNA ligase
EHELCC_00275 EHELCC_00275 Morganella morganii S2 trpS tryptophan--tRNA ligase
NLDBIP_03185 NLDBIP_03185 Morganella morganii S4 trpS tryptophan--tRNA ligase
LHKJJB_04700 LHKJJB_04700 Morganella morganii S3 trpS tryptophan--tRNA ligase
HKOGLL_02345 HKOGLL_02345 Morganella morganii S5 trpS tryptophan--tRNA ligase
F4V73_RS07310 F4V73_RS07310 Morganella psychrotolerans trpS tryptophan--tRNA ligase
PMI_RS08460 PMI_RS08460 Proteus mirabilis HI4320 trpS tryptophan--tRNA ligase

Distribution of group_543 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_543 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_543

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_543.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 trpS 7

Product

# Product Occurence
1 tryptophan--tRNA ligase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0180 7 J Translation, ribosomal structure and biogenesis (J) Tryptophanyl-tRNA synthetase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01867 7 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Aminoacyl-tRNA biosynthesis -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00579 7 tRNA synthetases class I (W and Y)

Annotations of the 213 SwissProt hits

Annotation Number of occurrences
Probable tyrosine--tRNA ligase, cytoplasmic 1
Tryptophan--tRNA ligase 135
Tryptophan--tRNA ligase 1 2
Tryptophan--tRNA ligase 2 4
Tryptophan--tRNA ligase, chloroplastic/mitochondrial 1
Tryptophan--tRNA ligase, cytoplasmic 2
Tryptophan--tRNA ligase, mitochondrial 7
Tyrosine--tRNA ligase 58
Tyrosine--tRNA ligase 1 1
Tyrosine--tRNA ligase 2 2

Protein length

Min length 337
Max length 339
Mean length (sd) 337.3 (0.8)
Median length 337.0

Protein length distribution