COG4987


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4987, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components
Function(s) descr. Energy production and conversion (C)
Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG4987 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_184 FBDBKF_07080 79887 81653 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S1
1 group_184 EHELCC_03890 104533 106299 1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S2
2 group_184 NLDBIP_03890 104329 106095 1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S4
3 group_184 LHKJJB_09720 104443 106209 1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S3
4 group_184 HKOGLL_09255 84843 86609 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S5
5 group_184 F4V73_RS01265 267662 269407 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella psychrotolerans
6 group_184 PMI_RS03410 752829 754580 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Proteus mirabilis HI4320