Orthogroup:group_433


Homologs in group_433

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00380 FBDBKF_00380 Morganella morganii S1 rcsB response regulator transcription factor RcsB
EHELCC_01165 EHELCC_01165 Morganella morganii S2 rcsB response regulator transcription factor RcsB
NLDBIP_02295 NLDBIP_02295 Morganella morganii S4 rcsB response regulator transcription factor RcsB
LHKJJB_03810 LHKJJB_03810 Morganella morganii S3 rcsB response regulator transcription factor RcsB
HKOGLL_03235 HKOGLL_03235 Morganella morganii S5 rcsB response regulator transcription factor RcsB
F4V73_RS06360 F4V73_RS06360 Morganella psychrotolerans rcsB response regulator transcription factor RcsB
PMI_RS08490 PMI_RS08490 Proteus mirabilis HI4320 rcsB response regulator transcription factor RcsB

Distribution of group_433 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_433 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_433

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_433.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rcsB 7

Product

# Product Occurence
1 response regulator transcription factor RcsB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2197 7 TK Signal transduction mechanisms (T)
Transcription (K)		 DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07687 7 two-component system, NarL family, captular synthesis response regulator RcsB Two-component system
Biofilm formation - Escherichia coli		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00072 7 Response regulator receiver domain
PF00196 7 Bacterial regulatory proteins, luxR family

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG049010 7 transcriptional regulator RcsB VF0571 Regulation

Annotations of the 105 SwissProt hits

Annotation Number of occurrences
Cyclic di-GMP phosphodiesterase PdeL 1
DNA-binding transcriptional activator DevR/DosR 2
DNA-binding transcriptional activator EvgA 4
DNA-binding transcriptional regulator NtrC 5
Fimbriae Z protein 3
Methanol utilization control regulatory protein MoxX 1
Nitrate/nitrite response regulator protein NarL 4
Nitrate/nitrite response regulator protein NarP 1
Nitrate/nitrite response regulator protein homolog 1
Oxygen regulatory protein NreC 18
Probable C4-dicarboxylate response regulator DctR 1
Probable transcriptional regulatory protein NarL 2
Probable transcriptional regulatory protein SgaR 1
Protein-glutamate methylesterase/protein-glutamine glutaminase 1
Protein-glutamate methylesterase/protein-glutamine glutaminase 2 2
Protein-glutamate methylesterase/protein-glutamine glutaminase 3 1
Putative HTH-type transcriptional regulator YhjB 1
Putative transcription factor YjjQ 1
Putative transcriptional regulator 1
Putative two-component response regulator ARR13 1
Response regulator GacA 4
Response regulator RamR 1
Response regulator SsrB 1
Response regulator UvrY 4
Response regulator protein VraR 12
Transcriptional activator protein BglJ 1
Transcriptional activator protein ExaE 1
Transcriptional regulatory protein DegU 2
Transcriptional regulatory protein DesR 1
Transcriptional regulatory protein LiaR 1
Transcriptional regulatory protein LnrK 1
Transcriptional regulatory protein MctR 1
Transcriptional regulatory protein RcsB 7
Transcriptional regulatory protein UhpA 5
Transcriptional regulatory protein YdfI 1
Uncharacterized HTH-type transcriptional regulator YuaB 1
Uncharacterized protein YjjQ 1
Uncharacterized response regulatory protein YgeK 2
Uncharacterized transcriptional regulatory protein YhcZ 1
Uncharacterized transcriptional regulatory protein YvfU 1
Uncharacterized transcriptional regulatory protein YxjL 1
Virulence factors putative positive transcription regulator BvgA 3

Protein length

Min length 216
Max length 230
Mean length (sd) 226.3 (6.4)
Median length 230.0

Protein length distribution