Orthogroup:group_413


Homologs in group_413

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17920 FBDBKF_17920 Morganella morganii S1 alpA DNA-binding transcriptional regulator AlpA
EHELCC_06415 EHELCC_06415 Morganella morganii S2 alpA DNA-binding transcriptional regulator AlpA
NLDBIP_06735 NLDBIP_06735 Morganella morganii S4 alpA DNA-binding transcriptional regulator AlpA
LHKJJB_19335 LHKJJB_19335 Morganella morganii S3 alpA DNA-binding transcriptional regulator AlpA
HKOGLL_04655 HKOGLL_04655 Morganella morganii S5 alpA DNA-binding transcriptional regulator AlpA
F4V73_RS02460 F4V73_RS02460 Morganella psychrotolerans - AlpA family transcriptional regulator
F4V73_RS10120 F4V73_RS10120 Morganella psychrotolerans - AlpA family transcriptional regulator
PMI_RS12875 PMI_RS12875 Proteus mirabilis HI4320 - AlpA family transcriptional regulator

Distribution of group_413 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_413 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_413

Orthogroup content: 8 members

Help

This page summarizes the annotation of all members of the orthologous group group_413.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 alpA 5
2 - 3

Product

# Product Occurence
1 DNA-binding transcriptional regulator AlpA 5
2 AlpA family transcriptional regulator 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3311 8 KX Transcription (K)
Mobilome: prophages, transposons (X)		 DNA-binding transcriptional regulator AlpA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07733 8 prophage regulatory protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05930 8 Prophage CP4-57 regulatory protein (AlpA)

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
DNA-binding transcriptional activator AlpA 1
Uncharacterized protein ORF88 1

Protein length

Min length 62
Max length 72
Mean length (sd) 63.8 (3.6)
Median length 62.0

Protein length distribution