Orthogroup:group_3720


Homologs in group_3720

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS00085 F4V73_RS00085 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS07030 F4V73_RS07030 Morganella psychrotolerans - type VI secretion system tube protein Hcp
F4V73_RS09355 F4V73_RS09355 Morganella psychrotolerans - Hcp family type VI secretion system effector

Distribution of group_3720 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3720 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3720

Orthogroup content: 3 members

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This page summarizes the annotation of all members of the orthologous group group_3720.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 3

Product

# Product Occurence
1 Hcp family type VI secretion system effector 2
2 type VI secretion system tube protein Hcp 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3157 3 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11903 3 type VI secretion system secreted protein Hcp Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05638 3 Type VI secretion system effector, Hcp

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG041074 1 Hcp family type VI secretion system effector VF1036 Effector delivery system
VFG041202 1 Hcp family type VI secretion system effector VF1263 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Protein hcp1 1

Protein length

Min length 161
Max length 172
Mean length (sd) 168.3 (6.4)
Median length 172.0

Protein length distribution