Orthogroup:group_3639


Homologs in group_3639

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_20630 FBDBKF_20630 Morganella morganii S1 xerD integron integrase
EHELCC_19910 EHELCC_19910 Morganella morganii S2 xerD integron integrase
NLDBIP_19905 NLDBIP_19905 Morganella morganii S4 intI1 class 1 integron integrase IntI1
LHKJJB_19875 LHKJJB_19875 Morganella morganii S3 xerD integron integrase
HKOGLL_19705 HKOGLL_19705 Morganella morganii S5 xerD integron integrase

Distribution of group_3639 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3639 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3639

Orthogroup content: 5 members

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This page summarizes the annotation of all members of the orthologous group group_3639.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 xerD 4
2 intI1 1

Product

# Product Occurence
1 integron integrase 4
2 class 1 integron integrase IntI1 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4974 5 L Replication, recombination and repair (L) Site-specific recombinase XerD

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 5 Phage integrase family
PF13495 5 Phage integrase, N-terminal SAM-like domain

Annotations of the 316 SwissProt hits

Annotation Number of occurrences
Integrase 5
Integrase/recombinase 3
Probable integrase/recombinase protein MJ0367 1
Probable site-specific recombinase 1
Probable site-specific recombinase in afa region 1
Putative integrase 1
Putative integrase/recombinase y4eF 1
Putative integrase/recombinase y4qK 1
Putative integrase/recombinase y4rA 1
Putative integrase/recombinase y4rC 1
Putative integrase/recombinase y4rF 1
Putative tyrosine recombinase CA_C2066 1
Putative tyrosine recombinase TTE1313 1
Putative tyrosine recombinase XerC 2
Resolvase 2
TnP I resolvase 1
Transposase A from transposon Tn554 3
Type 1 fimbriae regulatory protein FimB 2
Type 1 fimbriae regulatory protein FimE 3
Tyrosine recombinase EUBREC_2677 1
Tyrosine recombinase Synpcc7942_B2651 1
Tyrosine recombinase THA_404 1
Tyrosine recombinase Tlet_1492 1
Tyrosine recombinase XerA 7
Tyrosine recombinase XerC 199
Tyrosine recombinase XerC 1 1
Tyrosine recombinase XerC 2 1
Tyrosine recombinase XerC-like 1
Tyrosine recombinase XerD 68
Tyrosine recombinase XerH 2
Tyrosine recombinase slr0733 1

Protein length

Min length 288
Max length 337
Mean length (sd) 297.8 (21.9)
Median length 288.0

Protein length distribution