Orthogroup:group_347


Homologs in group_347

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12150 FBDBKF_12150 Morganella morganii S1 oxyR DNA-binding transcriptional regulator OxyR
EHELCC_14155 EHELCC_14155 Morganella morganii S2 oxyR DNA-binding transcriptional regulator OxyR
NLDBIP_15250 NLDBIP_15250 Morganella morganii S4 oxyR DNA-binding transcriptional regulator OxyR
LHKJJB_15360 LHKJJB_15360 Morganella morganii S3 oxyR DNA-binding transcriptional regulator OxyR
HKOGLL_14480 HKOGLL_14480 Morganella morganii S5 oxyR DNA-binding transcriptional regulator OxyR
F4V73_RS16945 F4V73_RS16945 Morganella psychrotolerans oxyR DNA-binding transcriptional regulator OxyR
PMI_RS11770 PMI_RS11770 Proteus mirabilis HI4320 - LysR family transcriptional regulator
PMI_RS16025 PMI_RS16025 Proteus mirabilis HI4320 oxyR DNA-binding transcriptional regulator OxyR

Distribution of group_347 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_347 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_347

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_347.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 oxyR 7
2 - 1

Product

# Product Occurence
1 DNA-binding transcriptional regulator OxyR 7
2 LysR family transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 8 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K04761 7 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator Biofilm formation - Escherichia coli -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 8 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 8 LysR substrate binding domain

Annotations of the 248 SwissProt hits

Annotation Number of occurrences
Carbapenem-hydrolyzing beta-lactamase transcriptional activator 1
DNA-binding transcriptional dual regulator OxyR 1
Glycine cleavage system transcriptional activator 3
Glycine cleavage system transcriptional activator homolog 1
HTH-type transcriptional activator AaeR 3
HTH-type transcriptional activator AllS 7
HTH-type transcriptional activator AmpR 1
HTH-type transcriptional activator BauR 1
HTH-type transcriptional activator CmpR 3
HTH-type transcriptional activator IlvY 3
HTH-type transcriptional activator TtdR 5
HTH-type transcriptional regulator AbaB 1
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AdmX 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator BbuR 1
HTH-type transcriptional regulator BenM 1
HTH-type transcriptional regulator BlaA 1
HTH-type transcriptional regulator BsdA 1
HTH-type transcriptional regulator BudR 1
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CatM 1
HTH-type transcriptional regulator CatR 1
HTH-type transcriptional regulator CbbR 5
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator CitR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CrgA 2
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CysB 7
HTH-type transcriptional regulator CysB (Fragment) 1
HTH-type transcriptional regulator CysL 1
HTH-type transcriptional regulator CzcR 7
HTH-type transcriptional regulator DgdR 1
HTH-type transcriptional regulator DmlR 1
HTH-type transcriptional regulator DsdC 1
HTH-type transcriptional regulator EstR 1
HTH-type transcriptional regulator GalR 1
HTH-type transcriptional regulator GbpR 2
HTH-type transcriptional regulator GltR 1
HTH-type transcriptional regulator HdfR 48
HTH-type transcriptional regulator IlvR 1
HTH-type transcriptional regulator IlvY 1
HTH-type transcriptional regulator MetR 7
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PecT 1
HTH-type transcriptional regulator PgrR 1
HTH-type transcriptional regulator PtxR 1
HTH-type transcriptional regulator ShiR 1
HTH-type transcriptional regulator SoxR 1
HTH-type transcriptional regulator SsuR 1
HTH-type transcriptional regulator TcbR 1
HTH-type transcriptional regulator TdcA 3
HTH-type transcriptional regulator TdfR 1
HTH-type transcriptional regulator TfdS 1
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator TrpI 1
HTH-type transcriptional regulator TsaR 1
HTH-type transcriptional regulator TtuA 2
HTH-type transcriptional regulator XapR 1
HTH-type transcriptional regulator YjiE 1
HTH-type transcriptional regulator YofA 2
HTH-type transcriptional regulator YtlI 1
HTH-type transcriptional regulator cbl 2
HTH-type transcriptional repressor PA14_22550 1
Hca operon transcriptional activator HcaR 1
Hydrogen peroxide-inducible genes activator 5
Malolactic fermentation system transcriptional activator 1
Malonate utilization transcriptional regulator 1
Nitrogen assimilation regulatory protein nac 2
Octopine catabolism/uptake operon regulatory protein OccR 3
Probable HTH-type transcriptional regulator LrhA 2
Probable HTH-type transcriptional regulator LrrA 1
Probable HTH-type transcriptional regulator LtrA 1
Probable RuBisCO transcriptional regulator 15
Probable cat1 operon transcriptional activator 1
Probable hydrogen peroxide-inducible genes activator 4
Probable hydrogen peroxide-inducible genes activator (Fragment) 1
Probable nitrogen assimilation transcriptional activator 2
Putative HTH-type transcriptional regulator protein PtxE (Fragment) 1
Putative transcriptional regulator 1
Regulatory protein NocR 2
RuBisCO operon transcriptional regulator 2
SDS degradation transcriptional activation protein 1
Small neutral protease regulatory protein 3
Transcriptional activator protein LysR 1
Transcriptional activator protein NhaR 2
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator HI_0775 1
Uncharacterized HTH-type transcriptional regulator MJ0300 1
Uncharacterized HTH-type transcriptional regulator MT2340 1
Uncharacterized HTH-type transcriptional regulator Mb2303c 1
Uncharacterized HTH-type transcriptional regulator Rv2282c 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YahB 1
Uncharacterized HTH-type transcriptional regulator YbhD 1
Uncharacterized HTH-type transcriptional regulator YcgK 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YeeY 1
Uncharacterized HTH-type transcriptional regulator YeiE 3
Uncharacterized HTH-type transcriptional regulator YfeR 2
Uncharacterized HTH-type transcriptional regulator YfiE 1
Uncharacterized HTH-type transcriptional regulator YhjC 1
Uncharacterized HTH-type transcriptional regulator YkuM 1
Uncharacterized HTH-type transcriptional regulator YneJ 1
Uncharacterized HTH-type transcriptional regulator YnfL 1
Uncharacterized HTH-type transcriptional regulator YoaU 1
Uncharacterized HTH-type transcriptional regulator YraN 1
Uncharacterized HTH-type transcriptional regulator YusT 1
Uncharacterized HTH-type transcriptional regulator YvbU 1
Uncharacterized HTH-type transcriptional regulator YwbI 1
Uncharacterized HTH-type transcriptional regulator YwqM 1
Uncharacterized HTH-type transcriptional regulator YxjO 1
Uncharacterized HTH-type transcriptional regulator YybE 1
Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region 1
Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) 1
Uncharacterized HTH-type transcriptional regulator y4mQ 1

Protein length

Min length 299
Max length 305
Mean length (sd) 302.8 (1.7)
Median length 303.0

Protein length distribution