Orthogroup:group_340


Homologs in group_340

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_11620 FBDBKF_11620 Morganella morganii S1 ligA NAD-dependent DNA ligase LigA
EHELCC_17540 EHELCC_17540 Morganella morganii S2 ligA NAD-dependent DNA ligase LigA
NLDBIP_18750 NLDBIP_18750 Morganella morganii S4 ligA NAD-dependent DNA ligase LigA
LHKJJB_17980 LHKJJB_17980 Morganella morganii S3 ligA NAD-dependent DNA ligase LigA
HKOGLL_18670 HKOGLL_18670 Morganella morganii S5 ligA NAD-dependent DNA ligase LigA
F4V73_RS08060 F4V73_RS08060 Morganella psychrotolerans ligA NAD-dependent DNA ligase LigA
F4V73_RS14615 F4V73_RS14615 Morganella psychrotolerans ligB NAD-dependent DNA ligase LigB
PMI_RS08995 PMI_RS08995 Proteus mirabilis HI4320 ligA NAD-dependent DNA ligase LigA

Distribution of group_340 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_340 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_340

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_340.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ligA 7
2 ligB 1

Product

# Product Occurence
1 NAD-dependent DNA ligase LigA 7
2 NAD-dependent DNA ligase LigB 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0272 8 L Replication, recombination and repair (L) NAD-dependent DNA ligase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01972 8 DNA ligase (NAD+) [EC:6.5.1.2] DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00533 7 BRCA1 C Terminus (BRCT) domain
PF01653 8 NAD-dependent DNA ligase adenylation domain
PF03119 7 NAD-dependent DNA ligase C4 zinc finger domain
PF03120 8 NAD-dependent DNA ligase OB-fold domain
PF12826 7 Helix-hairpin-helix motif
PF14520 7 Helix-hairpin-helix domain
PF22745 7 DNA ligase-like, N-terminal NAD+-binding domain

Annotations of the 729 SwissProt hits

Annotation Number of occurrences
DNA ligase 652
DNA ligase 1 3
DNA ligase 2 4
DNA ligase A 1
DNA ligase B 69

Protein length

Min length 563
Max length 676
Mean length (sd) 659.9 (39.2)
Median length 673.0

Protein length distribution