COG1304


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1304, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase
Function(s) descr. Energy production and conversion (C)
Lipid transport and metabolism (I)
General function prediction only (R)

Occurence in the database

COG1304 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_371 FBDBKF_13770 46930 48072 1 lldD FMN-dependent L-lactate dehydrogenase LldD Morganella morganii S1
1 group_371 EHELCC_11440 131806 132948 1 lldD FMN-dependent L-lactate dehydrogenase LldD Morganella morganii S2
2 group_371 NLDBIP_11785 131806 132948 1 lldD FMN-dependent L-lactate dehydrogenase LldD Morganella morganii S4
3 group_371 LHKJJB_11645 131806 132948 1 lldD FMN-dependent L-lactate dehydrogenase LldD Morganella morganii S3
4 group_371 HKOGLL_10255 131806 132948 1 lldD FMN-dependent L-lactate dehydrogenase LldD Morganella morganii S5
5 group_371 F4V73_RS08925 1852774 1853976 -1 lactate oxidase Morganella psychrotolerans
6 group_371 F4V73_RS12640 124920 126062 1 lldD FMN-dependent L-lactate dehydrogenase LldD Morganella psychrotolerans
7 group_371 PMI_RS17785 3906382 3907575 1 lactate oxidase Proteus mirabilis HI4320