Orthogroup:group_33


Homologs in group_33

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15 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08950 FBDBKF_08950 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_09005 FBDBKF_09005 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_10405 EHELCC_10405 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_10460 EHELCC_10460 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10750 NLDBIP_10750 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10805 NLDBIP_10805 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_10550 LHKJJB_10550 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_10605 LHKJJB_10605 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13610 HKOGLL_13610 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13665 HKOGLL_13665 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS10965 F4V73_RS10965 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS11020 F4V73_RS11020 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS18495 F4V73_RS18495 Morganella psychrotolerans - mobile mystery protein A
PMI_RS01265 PMI_RS01265 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS01315 PMI_RS01315 Proteus mirabilis HI4320 mrpJ transcriptional regulator MrpJ

Distribution of group_33 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_33 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_33

Orthogroup content: 15 members

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This page summarizes the annotation of all members of the orthologous group group_33.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hipB 10
2 - 4
3 mrpJ 1

Product

# Product Occurence
1 Transcriptional regulator, contains XRE-family HTH domain 10
2 helix-turn-helix transcriptional regulator 3
3 mobile mystery protein A 1
4 transcriptional regulator MrpJ 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 15 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 15 Helix-turn-helix

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG042629 2 transcriptional regulator MrpJ VF1233 Adherence

Annotations of the 11 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator DicA 1
Putative HTH-type transcriptional regulatory protein PF1851 1
Putative HTH-type transcriptional regulatory protein PH1808 1
Putative HTH-type transcriptional regulatory protein PYRAB03670 1
SPbeta prophage-derived uncharacterized HTH-type transcriptional regulator YonR 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 106
Max length 163
Mean length (sd) 116.3 (14.0)
Median length 109.0

Protein length distribution