Orthogroup:group_33


Homologs in group_33

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04630 FBDBKF_04630 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_10645 FBDBKF_10645 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_05920 EHELCC_05920 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_14980 EHELCC_14980 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_06240 NLDBIP_06240 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_14810 NLDBIP_14810 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_03120 LHKJJB_03120 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_14535 LHKJJB_14535 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_06595 HKOGLL_06595 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13155 HKOGLL_13155 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS09080 F4V73_RS09080 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS14355 F4V73_RS14355 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS08915 PMI_RS08915 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_33 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_33 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_33

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_33.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hipB 10
2 - 3

Product

# Product Occurence
1 Transcriptional regulator, contains XRE-family HTH domain 10
2 helix-turn-helix transcriptional regulator 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 13 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 13 Helix-turn-helix

Annotations of the 18 SwissProt hits

Annotation Number of occurrences
Antitoxin PezA 1
HTH-type transcriptional regulator ImmR 1
HTH-type transcriptional regulator RamB 2
Putative HTH-type transcriptional regulatory protein PF1851 1
Putative HTH-type transcriptional regulatory protein PH1808 1
Putative HTH-type transcriptional regulatory protein PYRAB03670 1
Putative HTH-type transcriptional regulatory protein TK0539 1
Repressor protein CI (Fragment) 1
SPbeta prophage-derived uncharacterized HTH-type transcriptional regulator YonR 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator YobD 1
Uncharacterized HTH-type transcriptional regulator y4aM 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 72
Max length 103
Mean length (sd) 88.5 (15.9)
Median length 100.0

Protein length distribution