Homologs in group_335

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10645 FBDBKF_10645 46.2 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_14980 EHELCC_14980 46.2 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_14810 NLDBIP_14810 46.2 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_14535 LHKJJB_14535 46.2 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13155 HKOGLL_13155 46.2 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS14355 F4V73_RS14355 46.2 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS10885 PMI_RS10885 38.2 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_335

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_335

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9ZD50 1.33e-10 57 47 0 61 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)
Q92HV3 5.22e-10 55 45 0 61 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P15017 4.74e-06 44 36 0 66 4 None Uncharacterized transcriptional regulator in ATPase CF(0) region Rhodospirillum rubrum
P55681 6.28e-06 45 34 0 64 4 NGR_a01020 Uncharacterized HTH-type transcriptional regulator y4wC Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P0C5S2 2.82e-05 43 30 0 68 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 2.82e-05 43 30 0 68 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)
P96631 0.000446 40 28 1 88 1 immR HTH-type transcriptional regulator ImmR Bacillus subtilis (strain 168)
O59472 0.000812 40 33 0 51 3 PH1808 Putative HTH-type transcriptional regulatory protein PH1808 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08915
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 1951618 - 1951920 (strand: -1)
Length 303 (nucleotides) / 100 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_335
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MSNKYPVAYAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLDVLGINIGNFFEDVMGGMVDVPENNEQHIPAHFDNKALSIF

Flanking regions ( +/- flanking 50bp)

CGCACTATTATAAATTAGATATCAATCAAAGTGAAAAGCGAGAACATATTATGAGTAACAAGTATCCAGTTGCTTACGCTGTTGGACAAAAAATAAAATCATTAAGAAAATCTCAAGGTTATACCGTATTTCAGTTAGCAAAAGAAATCGATATTAGTGAACAGCAATTATTTCGCTACGAACGCGGAGTTAATCGTATCGACATTGATTGCTTAGTTAAAGTCCTTGATGTGTTAGGCATTAATATAGGTAACTTCTTTGAAGATGTTATGGGGGGTATGGTTGATGTTCCTGAGAATAATGAACAACATATCCCAGCTCATTTCGACAATAAGGCTCTTTCTATTTTCTGATTGTAAGCTTTTAATTAGAAAGTTAGCTAGTATACAAATAATTAGATAAA