Orthogroup:group_3280


Homologs in group_3280

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08860 FBDBKF_08860 Morganella morganii S1 rtcR RNA repair transcriptional activator RtcR
EHELCC_12665 EHELCC_12665 Morganella morganii S2 rtcR RNA repair transcriptional activator RtcR
NLDBIP_13005 NLDBIP_13005 Morganella morganii S4 rtcR RNA repair transcriptional activator RtcR
LHKJJB_13550 LHKJJB_13550 Morganella morganii S3 rtcR RNA repair transcriptional activator RtcR
HKOGLL_11480 HKOGLL_11480 Morganella morganii S5 rtcR RNA repair transcriptional activator RtcR

Distribution of group_3280 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3280 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3280

Orthogroup content: 5 members

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This page summarizes the annotation of all members of the orthologous group group_3280.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rtcR 5

Product

# Product Occurence
1 RNA repair transcriptional activator RtcR 5

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4650 5 KT Transcription (K)
Signal transduction mechanisms (T)		 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K14414 5 transcriptional regulatory protein RtcR - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00158 5 Sigma-54 interaction domain
PF06956 5 Regulator of RNA terminal phosphate cyclase

Annotations of the 156 SwissProt hits

Annotation Number of occurrences
Acetoin catabolism regulatory protein 1
Acetoin dehydrogenase operon transcriptional activator AcoR 1
Alginate biosynthesis transcriptional regulatory protein AlgB 3
Anaerobic nitric oxide reductase transcription regulator NorR 52
C4-dicarboxylate transport transcriptional regulatory protein DctD 3
CD-NTase-associated protein 6 1
DNA-binding transcriptional activator HyfR 1
DNA-binding transcriptional regulator NtrC 10
Formate hydrogenlyase transcriptional activator 2
Formate hydrogenlyase transcriptional activator FhlA 1
Glycerol metabolism operon regulatory protein 1
HTH-type transcriptional regulatory protein TyrR 6
Hydrogenase transcriptional regulatory protein HoxA 2
Hydrogenase transcriptional regulatory protein HupR1 1
Limonene hydroxylase 1
Lon protease 2 1
Luminescence regulatory protein LuxO 2
Nif-specific regulatory protein 16
Nitric oxide reductase transcription regulator NorR1 1
Nitric oxide reductase transcription regulator NorR2 1
Nitrogen assimilation regulatory protein NtrX 1
Nitrogen fixation protein AnfA 1
Nitrogen fixation protein VnfA 1
PTS-dependent dihydroxyacetone kinase operon regulatory protein 1
Pathogenicity locus probable regulatory protein HrpR 1
Pathogenicity locus probable regulatory protein HrpS 2
Pathogenicity locus probable regulatory protein WtsA 1
Phenol regulator MopR 1
Propionate catabolism operon regulatory protein 2
Psp operon transcriptional activator 1
Putative response regulator NtrX-like 5
Putative sigma L-dependent transcriptional regulator YplP 1
Putative sigma L-dependent transcriptional regulator YqiR 1
Putative transcriptional regulatory protein y4pA 1
Putative uric acid sigma-54-dependent transcriptional regulator UacR 1
Regulatory protein AtoC 1
Regulatory protein LuxO 5
Response regulator protein FleR 1
Response regulator protein PilR 1
Sigma54-dependent transcriptional activator SfnR 1
Sigma54-dependent transcriptional regulator SfnR 1
Signal-transduction and transcriptional-control protein 1
Transcriptional activator RocR 1
Transcriptional regulator FleQ 1
Transcriptional regulator VasH 1
Transcriptional regulatory protein DagR 1
Transcriptional regulatory protein FlbD 1
Transcriptional regulatory protein FlgR 1
Transcriptional regulatory protein GlrR 1
Transcriptional regulatory protein LevR 1
Transcriptional regulatory protein QseF 1
Transcriptional regulatory protein RtcR 1
Transcriptional regulatory protein XylR 1
Transcriptional regulatory protein ZraR 5
Uncharacterized protein in HyuA 5'region (Fragment) 1

Protein length

Unique protein length 528

Protein length distribution