COG0300


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0300, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Short-chain dehydrogenase
Function(s) descr. General function prediction only (R)

Occurence in the database

COG0300 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1778 FBDBKF_12970 94487 95272 1 yqjQ SDR family oxidoreductase Morganella morganii S1
1 group_3046 FBDBKF_18190 3920 4708 1 yqjQ Short-chain dehydrogenase Morganella morganii S1
2 group_1778 EHELCC_06285 264519 265304 1 yqjQ SDR family oxidoreductase Morganella morganii S2
3 group_3046 EHELCC_18225 3793 4581 1 yqjQ Short-chain dehydrogenase Morganella morganii S2
4 group_1778 NLDBIP_06605 305584 306369 1 yqjQ SDR family oxidoreductase Morganella morganii S4
5 group_3046 NLDBIP_18150 3994 4782 1 yqjQ Short-chain dehydrogenase Morganella morganii S4
6 group_1778 LHKJJB_03485 283108 283893 1 yqjQ SDR family oxidoreductase Morganella morganii S3
7 group_3046 LHKJJB_18345 3832 4620 1 yqjQ Short-chain dehydrogenase Morganella morganii S3
8 group_1778 HKOGLL_06960 204972 205757 1 yqjQ SDR family oxidoreductase Morganella morganii S5
9 group_3046 HKOGLL_18080 3810 4598 1 yqjQ Short-chain dehydrogenase Morganella morganii S5
10 group_3046 F4V73_RS01735 384232 385020 1 SDR family NAD(P)-dependent oxidoreductase Morganella psychrotolerans
11 group_1778 F4V73_RS16155 34489 35274 1 SDR family oxidoreductase Morganella psychrotolerans
12 group_1778 PMI_RS10685 2349605 2350390 1 SDR family oxidoreductase Proteus mirabilis HI4320